episodes

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En route to check on a missing research team, Lt. Col. Sheppard, Dr. McKay, Teyla and Ronan emerge from the stargate to find themselves swimming atop a flooded valley. With only the apex of the gate accessible above the waterline they cling to it - soaked and bitterly cold - until a puddle jumper can make it through to rescue them.

But during the flight back to Atlantis, McKay inexplicably falls ill and in the days that follow, his condition declines further. Dr. Keller discovers a parasitic organism in his brain that cannot be surgically removed. As a result, his ability to function continues to deteriorate to the point where he has virtually no recollection of who he is or what he is capable of. Soon, his emotions and memories have regressed to those of a young boy and, fearing that he will not pull through, the doctor summons Jeannie, McKay’s sister, to say her final goodbyes.

But it’s too late. Rodney no longer recognizes her or any of his friends. However, Ronan has a plan, albeit a very risky one. He tells Jeannie of a place - a shrine located on the planet Talus - that would grant Rodney one day to be himself again, before he dies.

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Returning from an exploratory mission, the team is mystified when an arc of blue energy causes the puddle jumper’s primary systems to shut down, slamming them into an active stargate. They narrowly make it home, only to be greeted by similar erratic anomalies within the city itself. Soon, nearly every system in Atlantis is affected by ominous power disruptions.

Suddenly, a puzzling message appears on McKay’s computer screen. Its author claims to be a former friend long thought dead. Now an incorporeal presence, she begs Rodney to utilize the Ancient’s technology to build her a new body.

Highly skeptical, the Atlantis team is faced with an impossible decision. To create the means to release an entity who may, or may not be a friend, or stand by as it systematically destroys the city’s technological infrastructure.

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When a mysterious, duplicate Daedalus appears in orbit over Atlantis, the team is dispatched to investigate. Once aboard the deserted and severely damaged ship, the team discovers an ominous video message from the former captain. But before they can make sense of the situation, the ship is propelled into an alternate reality.

As McKay tries to figure out what is going on, the ship continues to jump through various alternate realities, encountering an alien armada and the blistering heat of an expanding sun. Worse - the team realizes that if they don’t find a way back to their reality soon, they risk being lost forever.

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Ronon is ambushed during an off-world mission and awakens, much later, a prisoner of his former friend, Tyre. The fellow Satedan, it turns out, has fallen on hard times since they last crossed paths. Abandoned by the wraith he once served, he is undergoing a physiological and psychological withdrawal from the reverse-feeding process once granted to him as a wraith worshiper. But he believes he has come up with a way to win back the respect of his former masters: by delivering them Ronon.

Intent on turning their defiant captive, the wraith begin their process of reverse-feeding - stealing Ronon’s life, bringing him to the brink of death, then restoring his youth. Again, and again, and again.

A tip, meanwhile, leads the team to an abandoned village. But Ronon and the wraith are long gone, and the only remnant of their former presence is a seriously injured Tyre who may be their only hope of rescuing their friend.

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When Dr. Keller fails to report for her morning shift, concerned team members investigate and are shocked by what they discover: Jennifer, unconscious in her quarters - a mysterious web of tendrils attached to her body. Suspecting her condition may be linked to her research into the wraith data recovered from Michael’s lab, the team makes the decision to bring Beckett out of stasis.

The beloved doctor leads the medical investigation while Sheppard and co. are quarantined under suspicion that they may have been exposed to the same virus that has affected Keller. As Beckett struggles to find a solution, the alien organism grows, creeping out into the adjoining corridors toward the main power grid. With Atlantis itself now under threat, Woolsey is ultimately faced with a decision that could cost Keller her life.

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An injured Sheppard is trapped alongside Ronon beneath the rubble of Michael’s collapsed compound. Trapped in another debris pocket, McKay and Lorne realize that a subspace burst has already reached Michael.

Light years away, Michael’s flagship Wraith Cruiser hurtles towards the compound. Imprisoned on board, a pregnant Teyla begs Kanann, the father of her baby, to help save her.

Carter leads a rescue mission to the planet. Her team succeeds in digging up McKay and Lorne, but Ronon and a rapidly deteriorating Sheppard are buried far deeper in the rubble. With Michael and his hybrids on their way back to deal with intruders, and the Daedalus already en route, the question becomes: Who will reach them first?